Publications and Preprints

• Stanne, T. M., Kushwaha, M., Wand, M., Taylor, J. E., and G. Rudenko, 2011. TbISWI Regulates Multiple Polymerase I (Pol I)-Transcribed Loci and Is Present at Pol II Transcription Boundaries in Trypanosoma brucei. Eukaryotic Cell 10: 964-976. (pdf)

• Tang, W., Taylor, J. E., and A. Mahalov, 2010. Lagrangian dynamics in stochastic inertia-gravity waves. Physics of Fluids 22: 126601. (pdf)

• M. Hutzenthaler and J. E. Taylor, 2010. Time Reversal of the Pseudo-hitchhiking Model and Some Related Jump-Diffusion Processes from Population Genetics. Adv. Appl. Prob. 42: 1-25. (pdf)

• A. M. Etheridge, R. C. Griffiths, and J. E. Taylor, 2010. A Coalescent Dual Process in a Moran Model with Genic Selection, and the Lambda Coalescent Limit. Theor. Pop. Biol. 78: 77-92. (pdf)

• J. E. Taylor, 2009. The Genealogical Consequences of Fecundity Variance Polymorphism. Genetics 182: 813-837. (pdf)

• J. E. Taylor and A. Veber, 2009. Coalescent processes in Subdivided Populations Subject to Recurrent Mass Extinctions. Elec. J. Prob. 14: 242-288. (pdf)

• C. Hertz-Fowler, L. M. Figueiredo et al., 2008. Telomeric Expression Sites Are Highly Conserved in Trypanosoma brucei. PloS One 3:e3527. (pdf)

• X. Didelot, J. E. Taylor, J. C. Watkins, 2008. A duality identity between a model of bacterial recombination and the Wright-Fisher diffusion. Markov Proc. Rel. Topics: A Festschrift for Thomas G. Kurtz. 4: 315-324. (pdf)

• J. E. Taylor, 2008. Environmental Variation, Fluctuating Selection and Genetic Drift in Subdivided Populations. Theor. Pop. Biol. 74: 233-250. (pdf)

• R. Young, J. E. Taylor, A. Kurioka, M. Becker, E. J. Louis, and G. Rudenko, 2008. Isolation and analysis of the genetic diversity of repertoires of VSG expression site containing telomeres from Trypanosoma brucei gambiense, T. b. brucei and T. equiperdum. BMC Genomics 9:385. (pdf)

• C. Salazar, C. D. Jiggins, J. E. Taylor, M. J. Kronforst and M. Linares, 2008. Hybrid speciation and the genealogical history of Heliconius heurippa. BMC Evol. Biol. 8:132. (pdf)

• R. Rong, S. Gnanakaran et al., 2007. Unique mutational patterns in the envelope alpha 2 amphipathic helix and acquisition of length in gp120 hypervariable domains are associated with resistance to autologous neutralization of subtype C human immunodeficiency virus type 1. J. Virology 81:5658-5668.

• J. E. Taylor, 2007. The Common Ancestor Process for a Wright-Fisher Diffusion. Elec. J. Prob. 12: 808-847. (pdf)

• J. E. Taylor and G. Rudenko, 2006. Switching trypanosome coats: What's in the wardrobe? Trends Genet. 22: 614-620. (pdf)

• M. P. Ramanathan, J. A. Chambers et al., 2005. Expression and evolutionary analysis of West Nile virus (Merion Strain). J. Neurovirology 11:544-556.

• J. E. Taylor and B. Korber, 2005. HIV-1 intra-subtype superinfection rates: estimates using a structured coalescent with recombination. Infection, Genetics and Evolution 5: 85-95. (pdf)

• F. Gao, T. Bhattacharya et al., 2003. Consensus and ancestral state HIV vaccines – Response. Science 299: 1517-1518.

• J. E. Taylor and J. Jaenike, 2003. Sperm competition and the dynamics of X chromosome drive in finite and structured populations. Ann. Zool. Fenn. 40: 195-206. (pdf)

• B. Gaschen, J. Taylor et al., 2002. AIDS - Diversity considerations in HIV-1 vaccine selection. Science 296: 2354-2360. (pdf)

• J. E. Taylor and J. Jaenike, 2002. Sperm competition and the dynamics of X chromosome drive: Stability and Extinction. Genetics 160: 1721-1731. (pdf)